Payroll taxes and filings
Which taxes exist, how deposit schedules work, what is filed and when, and how to read the tax screen before a deadline rather than after one.
ReferenceFor Business owners, Bookkeepers, Firm staff
Which taxes exist
| Tax | Paid by | Notes |
|---|---|---|
| Federal income tax withholding | Employee | Based on their W-4. |
| Social Security | Both | Employee and employer each pay a share, up to an annual wage base. |
| Medicare | Both | No wage cap. An additional employee-only rate applies above a threshold. |
| FUTA — federal unemployment | Employer | On a low annual wage base per employee. |
| State income tax withholding | Employee | Varies by state; several states have none. |
| SUTA — state unemployment | Employer | Your rate is assigned annually and varies by state and history. |
| Local taxes | Varies | City or county taxes exist in some jurisdictions. |
Deposit schedules
Withheld tax is not yours. It is held in trust and must be deposited on the schedule the IRS assigns you — typically monthly or semi-weekly — based on your prior-period liability. Your schedule can change year to year, and the tax screen shows the one currently assigned.
What gets filed
| Form | Frequency | Covers |
|---|---|---|
| 941 | Quarterly | Federal withholding, Social Security, and Medicare. |
| 944 | Annually | The same, for small employers assigned annual filing. |
| 940 | Annually | Federal unemployment. |
| W-2 | Annually | Employee wage and tax statement, due to employees in January. |
| W-3 | Annually | Transmittal summarizing the W-2s. |
| State withholding returns | Varies | By state schedule. |
| State unemployment returns | Usually quarterly | Wages and contributions by state. |
Reading the tax screen
The tax screen shows federal setup — EIN, filing form, deposit schedule — and one row per state where someone works, each with its account numbers and rates. Worksites drive which states appear, which is why adding a remote employee in a new state changes this screen.
Review it:
- Every January, when unemployment rates are reassigned.
- Whenever someone starts work in a new state.
- Whenever the IRS notifies you of a deposit schedule change.
- Before each quarter's filing deadline.
Common questions
Do not ignore it — penalties accrue. Read what period and what tax it concerns, compare against the filings and deposits on record, and contact support with the notice if the records disagree. Many notices resolve as timing differences rather than genuine shortfalls.
Update it as soon as the notice arrives. Running payroll at last year's rate under-accrues the liability all year and produces a balance due at reconciliation.
Generally yes — an employee working in a state usually creates a withholding and unemployment obligation there, regardless of where the business is. Register before their first payroll.
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